Update workflow step names

pipelines/steps/prepare_ebas_submission.py

@@ -239,7 +239,7 @@ def main(paths_to_processed_files : list, path_to_flags : str, month : str = Non
 
         workflowfile_builder = RenkuWorkflowBuilder(name=workflow_name)
         workflowfile_builder.add_step(
-            step_name=f"{workflow_name}_step",
+            step_name=f"prepare_ebas_submission",
             base_command="python",
             inputs=inputs,
             outputs=outputs,

pipelines/steps/visualize_datatable_vars.py

@@ -24,7 +24,7 @@ import plotly.graph_objects as go
 def visualize_table_variables(data_file_path, dataset_name, flags_dataset_name, x_var, y_vars,
                               yaxis_range_dict={'FlowRate_ccs': [0, 100]},
                               capture_renku_metadata=False,
-                              workflow_name="visualize_table_variables"):
+                              workflow_name="visualize_flagged_variables"):
 
     if not os.path.exists(data_file_path):
         raise ValueError(f"Path to input file {data_file_path} does not exists. The parameter 'data_file_path' must be a valid path to a suitable HDF5 file. ")

workflows/workflow_acsm_data_PAY_2024.yaml

@@ -119,7 +119,7 @@ steps:
     parameters:
     - month_range:
         value: 2-3
-  visualize_diagnostic_variables:
+  visualize_flagged_variables:
     command: python $script_py $data_file $dataset_name $flags_dataset_name $x_var
       $y_vars $fig_0_VaporizerTemp_C $fig_1_FlowRate_ccs $fig_2_FilamentEmission_mA
       $fig_3_ABsamp
@@ -153,32 +153,4 @@ steps:
         - FlowRate_ccs
         - FilamentEmission_mA
         - ABsamp
-  workflow_acsm_data_PAY_2024_step:
-    command: python $script_py $in_1 $in_2 $in_3 $in_4 $month_range
-    inputs:
-    - script_py:
-        path: pipelines/steps/prepare_ebas_submission.py
-    - in_1:
-        path: data/collection_PAY_2024_2025-06-06_2025-06-06/ACSM_TOFWARE_processed/2024/ACSM_PAY_2024_timeseries_calibrated.csv
-    - in_2:
-        path: data/collection_PAY_2024_2025-06-06_2025-06-06/ACSM_TOFWARE_processed/2024/ACSM_PAY_2024_timeseries_calibrated_err.csv
-    - in_3:
-        path: data/collection_PAY_2024_2025-06-06_2025-06-06/ACSM_TOFWARE_processed/2024/ACSM_PAY_2024_timeseries_calibration_factors.csv
-    - in_4:
-        path: data/collection_PAY_2024_2025-06-06_2025-06-06/ACSM_TOFWARE_flags/2024/ACSM_PAY_2024_timeseries_flags.csv
-    - lod:
-        path: pipelines/params/"limits_of_detection.yaml
-        implicit: true
-    - station:
-        path: pipelines/params/"station_params.yaml
-        implicit: true
-    outputs:
-    - out_1:
-        path: data/PAY_ACSM-092_2024.txt
-        implicit: true
-    - out_2:
-        path: data/PAY_ACSM-092_FLAGS_2024.txt
-        implicit: true
-    parameters:
-    - month_range:
-        value: 2-3
+