mirror of
https://gitea.psi.ch/APOG/acsm-fairifier.git
synced 2026-01-17 23:54:38 +01:00
36 lines
1.2 KiB
Docker
36 lines
1.2 KiB
Docker
# Get additional info about the Dockerfile at https://docs.docker.com/reference/dockerfile/
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FROM continuumio/miniconda3:latest
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# Define the name of the environment
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ARG ENV_NAME=apog_penv
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ENV ENV_NAME=apog_penv
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# Set the working directory
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WORKDIR /acsmdc
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# Use mamba if available for faster installation
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RUN conda install -y -n base -c conda-forge mamba && \
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mamba create -y -n $ENV_NAME -c conda-forge -c defaults python=3.11 \
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jupyter numpy h5py pandas matplotlib plotly=5.24 scipy pip && \
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conda clean --all -y && rm -rf /root/.cache/pip
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# Activate the environment and install additional pip packages
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RUN conda run -n $ENV_NAME pip install pybis==1.35 igor2 ipykernel sphinx dash dash-bootstrap-components
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# Set the default environment when the container starts
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ENV CONDA_DEFAULT_ENV=$ENV_NAME
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ENV PATH=/opt/conda/envs/$ENV_NAME/bin:$PATH
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# Create necessary directories for VOLUME
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RUN mkdir -p /acsmdc/data /acsmdc/figures /acsmdc/pipelines/params
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# Copy project files, excluding certain directories (handled via .dockerignore)
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COPY . /acsmdc
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# Define volumes for excluded directories
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VOLUME ["/acsmdc/data", "/acsmdc/figures", "/acsmdc/pipelines/params"]
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# Default command: Run Conda shell so Python and Conda are accessible
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CMD ["/bin/bash"]
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