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b93cb7517b
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Add comment to indicate where params are defined in original code.
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2025-03-14 13:40:22 +01:00 |
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7d277e3e3b
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Clean up print statements.
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2025-03-14 13:39:12 +01:00 |
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39a9ab07a2
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Refactor command line interface to run a main function on the parsed arguments.
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2025-03-14 13:36:52 +01:00 |
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8cdd8a0771
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Completed command line interface for pipelines/steps/prepare_ebas_submission.py. This finishes WIP associated with commit 2eb88e4.
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2025-03-14 13:09:09 +01:00 |
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b643eb2d26
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Refactored command line interface, generate_species_flags, and created functions to improve performance and code clarity.
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2025-03-13 14:17:46 +01:00 |
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97f253074b
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Add in try-except block a finally statement to close hdf5 file for secure file closing. This was done before in the try case which is not good practice
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2025-03-13 14:06:01 +01:00 |
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d6fa51effc
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Fix typo and missing key. 1) Update allowed yaml files in load_project_yaml_files by adding pipelines/params/calibration_factors.yaml. 2) Correct filename access after os.path.split operation.
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2025-03-10 13:02:38 +01:00 |
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4ca99f4f04
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Rewrote load_calib_file() in terms pipelines.steps.utils.load_project_yaml_files(). In the future we will replace it completely so we can validate and manage all yaml files in the chain in a more centralized manner.
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2025-03-10 11:46:24 +01:00 |
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ecdf3687ba
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Remove/replace def load_parameters(flag_type) with steps.utils.load_project_yaml_files(.). This is to have a more centralized treatment of yaml files inside the data chain.
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2025-03-10 11:38:51 +01:00 |
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cf073126b9
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Updated acsm raw to ebas terminology mapping. It is now complete!
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2025-03-07 16:53:22 +01:00 |
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2eb88e444c
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WIP: finished last commit, and tested the whole step. Now we need to implement the command line interface.
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2025-03-07 16:51:06 +01:00 |
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eb8a36dc8e
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Update pipelines/steps/apply_calibration_factors.py to generate error table and cleaned up command line interface.
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2025-03-07 16:49:32 +01:00 |
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cbad39355b
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Reformat LOD variable names for simplicity
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2025-03-07 16:46:48 +01:00 |
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78340464aa
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Add functions: generate_error_dataframe() with missing values, metadata_dict_to_dataframe(), and load_project_yaml_files() to easily access data from yaml files in the project.
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2025-03-07 16:45:33 +01:00 |
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35e08d387f
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Add pipelines/params/station_params.yaml, where station dependent temperature and preassure are to be defined. Crossed out associated TODO.md item.
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2025-03-07 11:23:48 +01:00 |
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f035afbf3b
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Fix duplicate time stamp problems and added code to check for NaTs before ebas submission files.)
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2025-03-04 09:02:37 +01:00 |
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9a23744f63
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Add acsm to ebas dictionary
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2025-03-04 09:01:09 +01:00 |
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6eccbb5018
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Moved get_metadata() from pipelines/steps/prepare_ebas_submission.py to utils.py
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2025-03-03 18:55:46 +01:00 |
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def67a0562
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Added correct calibration parameters to calibration factors table
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2025-03-03 14:23:45 +01:00 |
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d3a491ea85
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Renamed pipeline step join_tables.py to prepare_ebas_submission.py for accuracy. This step performs more than joining tables, it also does renaming using dictionaries and generates the ebas data submission package
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2025-03-03 10:48:03 +01:00 |
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877c0178d7
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WIP: Added first version of join_tables and tested txt generation. We should probaly make this step encompasse name renaming for EBAS and rename step to be more generic. Change join_tables.py to generate_ebas_converter_input_files
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2025-02-28 17:23:00 +01:00 |
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a9533ae3e8
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Refine function. Abstract out load parameters as function to simplify code.
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2025-02-28 17:18:13 +01:00 |
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6890377134
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Remove dataset_name parameter from command line interface. Instead i now infer it assuming there is a consistent input filename in the hdf5 file that can be found using hard coded keywords.
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2025-02-28 17:17:33 +01:00 |
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33f29a8080
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WIP: Completed flag generation for species, command line interface is now clear but still does not consider potentially existing flags. Review TODO.md, for efficiency we need to simplify flag assignment and reconciliation for the species flag type.
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2025-02-26 15:11:12 +01:00 |
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600c60be36
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Append variable specification for explicit definition of diagnostics and species to pipelines/params/calibration_params.yaml. This is to support flagging operations to particular variables
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2025-02-26 15:07:58 +01:00 |
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4edd6809e9
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WIP: Redesigned command line functionality. options --species is half baked :). It runs without error but second part needs validation.
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2025-02-22 16:00:27 +01:00 |
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e24d451542
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Updated thirdparty submodule to latest version
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2025-02-22 15:02:17 +01:00 |
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0911260f26
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Save changes.
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2025-02-15 18:20:58 +01:00 |
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a516479036
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Change data lineage format. Now, data lineage information is accessed using name of the file as key.
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2025-02-15 17:57:50 +01:00 |
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ca08044569
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Update keys of data_lineage_metadata.yaml. keys are now the filenames in the folder.
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2025-02-11 13:14:14 +01:00 |
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80fbe3af91
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Update params/validity_thresholds.yaml with values from 2024 JFJ ACSM data
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2025-02-11 13:12:00 +01:00 |
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0623c2462b
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Adjust command line interface of steps/apply_... and steps/compute_aut...
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2025-02-11 13:07:29 +01:00 |
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f2854d4ca0
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Implement pipelines/steps/visualize_datatable_vars.py
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2025-02-11 13:03:46 +01:00 |
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b966151d9c
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Update with template for compute_cpc_flags(). This still needs to be completed.
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2025-02-10 10:54:18 +01:00 |
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ca2b8b6787
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Rename apply_diagnostic_flags.py to compute_automated_flags.py because the function also computes both cpc and diagnostic based flags
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2025-02-10 10:45:55 +01:00 |
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d93003f5c4
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Add import statement and adjust dependencies.
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2025-02-06 16:57:46 +01:00 |
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ad95d11a0d
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Implement utils module for reusable functions across steps in the pipelines
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2025-02-06 16:54:36 +01:00 |
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6ed9fe1eb1
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Rename pipeline step to apply_diagnositc_flags, it perform a check based on specified thresholds and then assigns I, V, or M labels producing a labeling of a variable.
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2025-02-06 16:25:40 +01:00 |
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f8b900422b
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Rename function
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2025-02-06 16:15:19 +01:00 |
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2c2b154528
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Update to account for yaml file attribute renamings.
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2025-02-05 18:15:43 +01:00 |
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e2b5aa9d69
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Update file structure to depend on calibration_parameters.yaml and update thresholds for JFJ/ACSM_TOFWARE/2024 data.
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2025-02-05 17:05:07 +01:00 |
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afd6ef4d1b
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Fix typo in denominators.
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2025-02-05 16:49:36 +01:00 |
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bc779bd583
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Update calibration parameters for JFJ/ACSM_TOFWARE/2024 data.
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2025-02-05 16:48:14 +01:00 |
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48e2127fef
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Reimplement apply_calibration_factors() in terms of load_calibration_file() and compute_calibration_factors() to reduce complexity and improve modularity.
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2025-02-04 18:12:42 +01:00 |
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a5a9fa9c3f
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Add anchor to default params from tofware and use alias to complete interval specific params coming from time period specific calibrations
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2025-02-04 14:31:42 +01:00 |
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484eb1ae2c
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Change path to file to be relative with respect to project directory path.
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2025-02-03 16:13:19 +01:00 |
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caa40304c5
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Fix typo
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2025-02-03 16:11:32 +01:00 |
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baf755cebd
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Move params defined in calibration_factors.yaml to a file calibration_params.yaml to decouple user-input from low-level pipeline parameters.
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2025-02-03 11:53:20 +01:00 |
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fba121cf5c
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Remove anchors and replace aliases with the name of the keyword they refer to. Example, keyword : keyword_anchor value, *keyword_anchor replaced as keyword.
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2025-02-03 11:28:57 +01:00 |
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713a4c4fe7
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Add calibration intevals keyword, which enables adding calibration parameters for specific time intervals. The calibration function is actually a piecewise function, where each piece uses a different set of calibration params.
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2025-02-03 10:54:16 +01:00 |
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