Commit Graph

252 Commits

Author SHA1 Message Date
def67a0562 Added correct calibration parameters to calibration factors table 2025-03-03 14:23:45 +01:00
d3a491ea85 Renamed pipeline step join_tables.py to prepare_ebas_submission.py for accuracy. This step performs more than joining tables, it also does renaming using dictionaries and generates the ebas data submission package 2025-03-03 10:48:03 +01:00
877c0178d7 WIP: Added first version of join_tables and tested txt generation. We should probaly make this step encompasse name renaming for EBAS and rename step to be more generic. Change join_tables.py to generate_ebas_converter_input_files 2025-02-28 17:23:00 +01:00
a9533ae3e8 Refine function. Abstract out load parameters as function to simplify code. 2025-02-28 17:18:13 +01:00
6890377134 Remove dataset_name parameter from command line interface. Instead i now infer it assuming there is a consistent input filename in the hdf5 file that can be found using hard coded keywords. 2025-02-28 17:17:33 +01:00
499ba3d1c7 Update TODO.md 2025-02-27 09:14:19 +01:00
33f29a8080 WIP: Completed flag generation for species, command line interface is now clear but still does not consider potentially existing flags. Review TODO.md, for efficiency we need to simplify flag assignment and reconciliation for the species flag type. 2025-02-26 15:11:12 +01:00
600c60be36 Append variable specification for explicit definition of diagnostics and species to pipelines/params/calibration_params.yaml. This is to support flagging operations to particular variables 2025-02-26 15:07:58 +01:00
6d5d74e616 Append flag_ranking to app/flags/ebas_dict.yaml. This is to disambiguate/overide conflicting flags 2025-02-26 15:05:06 +01:00
e6868da3d4 Update dima to latest version 2025-02-25 13:34:52 +01:00
94cd536204 Updated dima to latest version 2025-02-22 18:08:14 +01:00
4edd6809e9 WIP: Redesigned command line functionality. options --species is half baked :). It runs without error but second part needs validation. 2025-02-22 16:00:27 +01:00
e24d451542 Updated thirdparty submodule to latest version 2025-02-22 15:02:17 +01:00
456f4c297f Adjust code due to changes in flag definition location. 2025-02-20 17:28:43 +01:00
60e1c35745 Move flag definitions from ...utils.py to flags/ebas_flags.yaml 2025-02-20 17:26:50 +01:00
dc34e07f62 Add actris_acsm_converter as a third_party submodule 2025-02-20 16:07:47 +01:00
ae15333207 Update layout figure 2025-02-17 15:46:40 +01:00
de33977e71 Start restructuring of app to make it more modular, and improve layout a bit 2025-02-17 15:44:51 +01:00
0454b54b8c Fix bug: When flag folder empty, it now returns [] (as opposed to None) 2025-02-17 15:42:57 +01:00
0911260f26 Save changes. 2025-02-15 18:20:58 +01:00
25f3ee12a4 Fix bug. Saved flags from apps were not associated with right parent variable. 2025-02-15 18:10:29 +01:00
46767996b8 Modify experimental campaign descriptor to point to yearly acsm_tofware data. 2025-02-15 18:08:14 +01:00
a516479036 Change data lineage format. Now, data lineage information is accessed using name of the file as key. 2025-02-15 17:57:50 +01:00
3123fec9da Add new version of dash board graphical user interphase 2025-02-13 19:59:20 +01:00
10fdd1b8c7 Fix bug when saving flags to flagsFolder and subsequent visualization of existing flags. 2025-02-13 19:58:30 +01:00
e53d8dec8c Simplify load_flags() function by removing redundant h5 verification step 2025-02-13 19:56:44 +01:00
11ecdebf1b Move flagging app to app folder with initialized callbacks/ and components/ modules 2025-02-13 18:13:45 +01:00
479c11d0d4 Move app scripts to app folder. This is to improve modularity of the app 2025-02-13 18:03:41 +01:00
1a86dc2065 Implement instrument, file, and variable selection dropdown menus. 2025-02-13 17:56:08 +01:00
79f9badb1c Update dima submodule to latest version. 2025-02-11 13:16:14 +01:00
f2d46101b1 Add demo jupyter notebook to visualize variables and their associated flags 2025-02-11 13:15:19 +01:00
ca08044569 Update keys of data_lineage_metadata.yaml. keys are now the filenames in the folder. 2025-02-11 13:14:14 +01:00
80fbe3af91 Update params/validity_thresholds.yaml with values from 2024 JFJ ACSM data 2025-02-11 13:12:00 +01:00
0623c2462b Adjust command line interface of steps/apply_... and steps/compute_aut... 2025-02-11 13:07:29 +01:00
f2854d4ca0 Implement pipelines/steps/visualize_datatable_vars.py 2025-02-11 13:03:46 +01:00
e7ad4d2a36 Add new demo for acsm pipeline and clearout the other notebooks 2025-02-10 16:15:56 +01:00
3c482c1d21 Rename and move jupyter notebook demos to notebooks folder 2025-02-10 16:14:49 +01:00
b966151d9c Update with template for compute_cpc_flags(). This still needs to be completed. 2025-02-10 10:54:18 +01:00
ca2b8b6787 Rename apply_diagnostic_flags.py to compute_automated_flags.py because the function also computes both cpc and diagnostic based flags 2025-02-10 10:45:55 +01:00
e2958b608f Update dima to latest version 2025-02-08 14:52:27 +01:00
d93003f5c4 Add import statement and adjust dependencies. 2025-02-06 16:57:46 +01:00
ad95d11a0d Implement utils module for reusable functions across steps in the pipelines 2025-02-06 16:54:36 +01:00
6ed9fe1eb1 Rename pipeline step to apply_diagnositc_flags, it perform a check based on specified thresholds and then assigns I, V, or M labels producing a labeling of a variable. 2025-02-06 16:25:40 +01:00
f8b900422b Rename function 2025-02-06 16:15:19 +01:00
5e979b4e5e Update dima submodule to latest version 2025-02-06 16:08:35 +01:00
2c2b154528 Update to account for yaml file attribute renamings. 2025-02-05 18:15:43 +01:00
e2b5aa9d69 Update file structure to depend on calibration_parameters.yaml and update thresholds for JFJ/ACSM_TOFWARE/2024 data. 2025-02-05 17:05:07 +01:00
afd6ef4d1b Fix typo in denominators. 2025-02-05 16:49:36 +01:00
bc779bd583 Update calibration parameters for JFJ/ACSM_TOFWARE/2024 data. 2025-02-05 16:48:14 +01:00
48e2127fef Reimplement apply_calibration_factors() in terms of load_calibration_file() and compute_calibration_factors() to reduce complexity and improve modularity. 2025-02-04 18:12:42 +01:00