mirror of
https://gitea.psi.ch/APOG/acsm-fairifier.git
synced 2025-07-11 10:11:49 +02:00
Add new demo for acsm pipeline and clearout the other notebooks
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@ -19,7 +19,7 @@
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},
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{
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"cell_type": "code",
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"execution_count": 1,
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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@ -33,8 +33,10 @@
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"#sys.path.append(os.path.join(root_dir,'dima','src'))\n",
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"#sys.path.append(os.path.join(root_dir,'dima','utils'))\n",
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"\n",
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"import dima.src.hdf5_vis as hdf5_vis\n",
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"import dima.pipelines.data_integration as dilib\n"
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"import dima.visualization.hdf5_vis as hdf5_vis\n",
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"import dima.pipelines.data_integration as data_integration\n",
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"\n",
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"\n"
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]
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},
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{
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@ -50,11 +52,12 @@
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},
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{
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"cell_type": "code",
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"execution_count": 2,
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"yaml_config_file_path = 'dima_config.yaml'"
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"#yaml_config_file_path = 'dima/input_files/data_integr_config_file_TBR.yaml' \n",
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"yaml_config_file_path ='campaignDescriptor.yaml'"
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]
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},
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{
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@ -73,7 +76,16 @@
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"outputs": [],
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"source": [
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"\n",
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"hdf5_file_path = dilib.integrate_data_sources(yaml_config_file_path)"
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"hdf5_file_path = data_integration.run_pipeline(yaml_config_file_path)"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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"hdf5_file_path"
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]
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},
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{
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@ -98,6 +110,11 @@
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" hdf5_vis.display_group_hierarchy_on_a_treemap(hdf5_file_path)"
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]
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},
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": []
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},
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{
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"cell_type": "markdown",
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"metadata": {},
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@ -107,7 +124,7 @@
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},
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{
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"cell_type": "code",
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"execution_count": 8,
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": [
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@ -145,7 +162,7 @@
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],
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"metadata": {
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"kernelspec": {
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"display_name": "multiphase_chemistry_env",
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"display_name": "flaggingapp_env",
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"language": "python",
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"name": "python3"
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},
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@ -159,7 +176,7 @@
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.11.9"
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"version": "3.10.15"
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}
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},
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"nbformat": 4,
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