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Add new demo for acsm pipeline and clearout the other notebooks

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florez_j
2025-02-10 16:15:56 +01:00
parent 3c482c1d21
commit e7ad4d2a36
3 changed files with 421 additions and 18 deletions
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35
notebooks/demo_data_integration.ipynb
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@ -19,7 +19,7 @@
},
{
"cell_type": "code",
"execution_count": 1,
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
@ -33,8 +33,10 @@
"#sys.path.append(os.path.join(root_dir,'dima','src'))\n",
"#sys.path.append(os.path.join(root_dir,'dima','utils'))\n",
"\n",
"import dima.src.hdf5_vis as hdf5_vis\n",
"import dima.pipelines.data_integration as dilib\n"
"import dima.visualization.hdf5_vis as hdf5_vis\n",
"import dima.pipelines.data_integration as data_integration\n",
"\n",
"\n"
]
},
{
@ -50,11 +52,12 @@
},
{
"cell_type": "code",
"execution_count": 2,
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"yaml_config_file_path = 'dima_config.yaml'"
"#yaml_config_file_path = 'dima/input_files/data_integr_config_file_TBR.yaml' \n",
"yaml_config_file_path ='campaignDescriptor.yaml'"
]
},
{
@ -73,7 +76,16 @@
"outputs": [],
"source": [
"\n",
"hdf5_file_path = dilib.integrate_data_sources(yaml_config_file_path)"
"hdf5_file_path = data_integration.run_pipeline(yaml_config_file_path)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"hdf5_file_path"
]
},
{
@ -98,6 +110,11 @@
" hdf5_vis.display_group_hierarchy_on_a_treemap(hdf5_file_path)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": []
},
{
"cell_type": "markdown",
"metadata": {},
@ -107,7 +124,7 @@
},
{
"cell_type": "code",
"execution_count": 8,
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
@ -145,7 +162,7 @@
],
"metadata": {
"kernelspec": {
"display_name": "multiphase_chemistry_env",
"display_name": "flaggingapp_env",
"language": "python",
"name": "python3"
},
@ -159,7 +176,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.9"
"version": "3.10.15"
}
},
"nbformat": 4,