bartels-rausch
091cf00e77
* Transitioned nappNorm, nappDetermineShift, and nappCopyShift to use modern MATLAB arguments blocks, removing their legacy functionSignatures.json entries.
* Refactored nappNorm to rely on prior peak fitting results (e.g., from nappFitGaussXps) for normalization rather than performing the fitting internally.
* Decoupled energy calibration: nappDetermineShift now solely calculates internal binding energy shifts, and nappCopyShift distributes them using a unified matching engine ('earlier', 'after', 'spectrumNumber').
* Implemented a Universal Logging Block to track data provenance, automatically appending execution timestamps and caller script names to processed rows.
* Updated nappCombineSpectra to output a logDataSource cell array and cleanly name combined spectra.
* Created nappSaveDataTable for automatic, script-named .mat file saving, complete with a Live Editor interceptor.
* Added a publish-mode silencer to nappFitGaussXps to prevent optimizer spam in generated PDFs.
* Updated readme.md to document the new arguments structure, the 3-step calibration workflow, the matching engine, and the new table variables.
146 lines
6.1 KiB
JSON
146 lines
6.1 KiB
JSON
{
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"_schemaVersion": "1.0.0",
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"nappPlot": {
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"inputs": [
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{"name": "DataTable", "kind": "required", "type": ["table"]},
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{"name": "tableSelection", "kind": "optional", "type": ["logical"]},
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{"name": "tableVariable", "kind": "namevalue", "type": ["choices={'image','imageRoh','spectrum_countsPerSecond','spectrum_counts','spectrum_countsNorm'}"]},
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{"name": "mode", "kind": "namevalue", "type": ["choices={'AllInOne','OneEach','iterations','AugerMeitner','interactive'}"]},
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{"name": "figureMode", "kind": "namevalue", "type": ["choices={'screen','powerpoint','word'}"]},
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{"name": "energyScale", "kind": "namevalue", "type": ["choices={'kinetic','binding','xRay','sweeps'}"]},
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{"name": "plotStep", "kind": "namevalue", "type": ["numeric"]},
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{"name": "AugerMeitnerEnergies", "kind": "namevalue", "type": ["numeric"]}
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]
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},
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"nappGenerateSpectra": {
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"inputs": [
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{"name": "DataTable", "kind": "required", "type": ["table"]},
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{"name": "tableSelection", "kind": "optional", "type": ["logical"]},
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{"name": "tableVariable", "kind": "namevalue", "type": ["choices={'image','imageRoh'}"]},
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{"name": "mode", "kind": "namevalue", "type": ["choices={'mean','sum','trapz','AugerMeitnerMean'}"]},
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{"name": "iterationRange", "kind": "namevalue", "type": ["numeric"]},
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{"name": "eKinStart", "kind": "namevalue", "type": ["numeric"]},
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{"name": "eKinEnd", "kind": "namevalue", "type": ["numeric"]}
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]
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},
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"nappFitGaussXps": {
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"inputs": [
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{"name": "DataTable", "kind": "required", "type": ["table"]},
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{"name": "FitParameter", "kind": "required", "type": ["struct"]},
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{"name": "tableSelection", "kind": "optional", "type": ["logical"]},
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{"name": "tableVariable", "kind": "namevalue", "type": ["choices={'spectrum_counts','spectrum_countsPerSecond','spectrum_countsNorm'}"]},
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{"name": "mode", "kind": "namevalue", "type": ["choices={'unconstrained','widthPosition','position','width','widthPositionShirley','positionShirley','widthShirley','unconstrainedAndWidthPosition','gasAndTwoAcidBasePairs','widthPositionAreaRatio','widthPositionAmineAreaRatio','TwoSpinOrbitDoublet','TwoSpinOrbitDoubletPseudoVoigtShirley','GasAndSurfaceSpinOrbitDoublet'}"]},
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{"name": "showFigures", "kind": "namevalue", "type": ["choices={'on','off'}"]},
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{"name": "energyScale", "kind": "namevalue", "type": ["choices={'kinetic','binding'}"]},
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{"name": "backgroundMode", "kind": "namevalue", "type": ["choices={'linear','shirley'}"]},
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{"name": "peakWidthMode", "kind": "namevalue", "type": ["choices={'gauss','FWHM'}"]}
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]
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},
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"nappFileList": {
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"inputs": [
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{"name": "dataPath", "kind": "required"},
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{"name": "DataTable", "kind": "optional", "type": ["table"]},
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{"name": "mode", "kind": "namevalue", "type": ["choices={'local','nappDrive','dataDrive','localNew','nappDrivePick','localPick','dataPick'}"]},
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{"name": "importLabView", "kind": "namevalue", "type": ["choices={'on','off'}"]}
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]
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},
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"nappCombineSpectra": {
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"inputs": [
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{"name": "DataTable", "kind": "required", "type": ["table"]},
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{"name": "tableSelection", "kind": "namevalue", "type": ["logical"]},
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{"name": "tableRow", "kind": "namevalue", "type": ["numeric"]},
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{"name": "tableVariable", "kind": "namevalue", "type": ["choices={'nexafsSpectrum','spectrum_counts','spectrum_countsPerSecond','spectrum_countsNorm','nexafsSpectrumPreBackground','nexafsSpectrumPreNorm','nexafsSpectrumPreGasPhase','nexafsSpectrumPreI0','nexafsSpectrumPreAdvCarb'}"]},
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{"name": "mode", "kind": "namevalue", "type": ["choices={'sum','average','subtract'}"]},
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{"name": "energyScale", "kind": "namevalue", "type": ["choices={'kinetic','binding','xRay'}"]},
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{"name": "output", "kind": "namevalue", "type": ["choices={'simple','complete'}"]}
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]
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},
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"nappBindingEnergyXps": {
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"inputs": [
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{"name": "DataTable", "kind": "required", "type": ["table"]},
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{"name": "tableSelection", "kind": "namevalue", "type": ["logical"]},
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{"name": "tableVariable", "kind": "namevalue", "type": ["choices={'spectrum_counts','spectrum_countsPerSecond'}"]}
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]
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},
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"nappAlignImages": {
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"inputs": [
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{"name": "DataTable", "kind": "required", "type": ["table"]},
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{"name": "tableSelection", "kind": "namevalue", "type": ["logical"]},
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{"name": "tableVariable", "kind": "namevalue", "type": ["choices={'imageRoh','image'}"]}
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]
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},
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"nappAddFitToPlot": {
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"inputs": [
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{"name": "DataTable", "kind": "required", "type": ["table"]},
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{"name": "tableSelection", "kind": "optional"},
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{"name": "plotHandle", "kind": "optional"},
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{"name": "peakWidthMode", "kind": "optional"},
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{"name": "energyScale", "kind": "optional"}
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]
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},
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"nappAnnotateSurvey": {
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"inputs": [
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{"name": "X", "kind": "required"},
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{"name": "Y", "kind": "required"},
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{"name": "dataObjs", "kind": "required"},
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{"name": "labeltext", "kind": "required"}
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]
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},
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"Napp_RH_p": {
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"inputs": [
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{"name": "T_current", "kind": "required"},
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{"name": "partial_pressure_water", "kind": "required"}
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]
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},
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"Napp_p_RH": {
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"inputs": [
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{"name": "T_current", "kind": "required"},
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{"name": "RH", "kind": "required"}
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]
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},
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"Napp_p_ice": {
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"inputs": [
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{"name": "T_current", "kind": "required"}
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]
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},
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"createBeamtimeFolder": {
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"inputs": [
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{"name": "projectName", "kind": "required"}
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]
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},
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"addSampleNotes": {
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"inputs": [
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{"name": "DataTable", "kind": "required", "type": ["table"]},
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{"name": "fileNumber", "kind": "required"},
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{"name": "notesToAdd", "kind": "required"},
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{"name": "dataMonth", "kind": "required"},
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{"name": "dataYear", "kind": "required"},
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{"name": "tableSelection", "kind": "required"}
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]
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},
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"addPhotonEnergy": {
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"inputs": [
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{"name": "FileList", "kind": "required"},
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{"name": "fileNumber", "kind": "required"},
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{"name": "notesToAdd", "kind": "required"},
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{"name": "dataMonth", "kind": "required"},
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{"name": "dataYear", "kind": "required"}
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]
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}
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} |