%% 20251119 ISS BeamTime
%
% We do this for ALL spectra during each beamtime. The code here is just
% for illustration and sample names might not make sense.
%% Start fresh
close all
clearvars
clc

%% Import Data
FileList = nappFileList('2025/20251119_NappIss','mode','local','importLabView','off');
save("FileList.mat","FileList")

%% Add sample label 
%
% Typical info includes: sample, gas environment, purpose, project.

FileList = addSampleNotes(FileList,0:3,'test, empty file',11,2025,".h5");
FileList = addSampleNotes(FileList,1,'test, empty file',11,2025,"XPS");
FileList = addSampleNotes(FileList,128,'this is a sample description',11,2025,"XPS");
FileList = addSampleNotes(FileList,[74,78,80,82,83,84,85,86], ...
    'Al-oxide, water, optimize peak separation, Celia',11,2025,"XPS"); % not ideal E_kin windows
% List selected files
tmpDataSelection = startsWith(FileList.name, "0074");
% disp(FileList(tmpDataSelection,{'name','lastModifiedDatestr','sample'}))

%% Identify faulty data and files
%
% We use the phrase "(bad data)" at the end of the sample description to
% filter faulty files during the later analysis. 
%
% Running addSampleNotes again will overwrite the old entry. If you want to
% keep notes on the sample and only add (bad data) at the end, you need to
% paste the whole text string:
FileList = addSampleNotes(FileList,[4,6,7,8,19,43],'(bad data)',11,2025,"XPS"); % data file corrupted
FileList = addSampleNotes(FileList,[74,78,80,82,83,84,85,86], ...
    'Al-oxide, water, optimize peak separation, Celia (bad data)',11,2025,"XPS"); % not ideal E_kin windows
% List selected files
tmpDataSelection = startsWith(FileList.name, "0074");
% disp(FileList(tmpDataSelection,{'name','lastModifiedDatestr','sample'}))

%% Add photon energy
FileList = addPhotonEnergy(FileList,91:94,750,11,2025);

%% Save
%
% The FileList table holds data and metadata for all beamtime data. It is
% saved in a mat file for further use.
close all
clearvars -except FileList
save("FileList.mat","FileList")