diff --git a/beamtime/readme.md b/beamtime/readme.md index 901dfe7..0e0dd25 100644 --- a/beamtime/readme.md +++ b/beamtime/readme.md @@ -167,14 +167,14 @@ Beamtime data are processed in *two main phases*: ### 🔁 Typical Processing Chain ````` -beamtime raw files
 -↓
importData.m → FileList.mat
 -↓
generateSpectra.m → SpectrumList.mat
 -↓
AnalysisStep4SurfaceConcentration.m → AnalysisStep4SurfaceConcentration.mat
 -↓
GaussFitHClOnIce.m → GaussFitHClOnIce.mat
 +beamtime raw files +↓importData.m → FileList.mat +↓generateSpectra.m → SpectrumList.mat +↓AnalysisStep4SurfaceConcentration.m → AnalysisStep4SurfaceConcentration.mat +↓GaussFitHClOnIce.m → GaussFitHClOnIce.mat SpectrumList.mat -↓
FigureHexylamineN1sLjIce.m → FigureHexylamineN1sLjIce.mat +↓FigureHexylamineN1sLjIce.m → FigureHexylamineN1sLjIce.mat `````` Reuse `.mat` outputs to skip re-running previous steps 🧠💤 @@ -258,7 +258,60 @@ save('FileList.mat',"FileList"); - Scripts: descriptive names like `generateSpectra.m`, `PlottingForAnand.m`. - Output: typically script‑matching names, saved into `.mat` files. -*** +### Data files date and time + +Copying files while preserving their original timestamps (Creation Date and Last Modification Date) is a common challenge because standard "drag-and-drop" operations often treat the copy as a "new" file created at the moment of the transfer. + +To do this safely and reliably, you need to use specific commands or utilities designed for archival integrity. + +#### 🪟 Windows 11: Using Robocopy + +The most robust tool built into Windows is **Robocopy** (Robust File Copy). Unlike the standard copy command, it has specific flags for metadata. + +1. Open **Terminal** or **Command Prompt**. +2. Use the following syntax: +```cmd +robocopy "C:\Source\Folder" "D:\Destination\Folder" /E /DCOPY:DAT /COPY:DAT + +``` + +**Breakdown of Flags** + +* **`/E`**: Copies all subdirectories, including empty ones. +* **`/DCOPY:DAT`**: This is the crucial part. It tells Windows to copy the **Data, Attributes, and Timestamps** for **directories**. +* **`/COPY:DAT`**: Tells Windows to copy the **Data, Attributes, and Timestamps** for **files**. + +--- + +#### 🍎 macOS: Using `cp` or `rsync` + +On macOS, the standard "Finder" copy usually preserves the *Modification Date* but often resets the *Creation Date* to the time of the copy. To preserve everything, use the Terminal. + +##### Option A: The `cp` command (Simplest) + +1. Open **Terminal**. +2. Run: +```bash +cp -pPR /Source/Path /Destination/Path + +``` + + + +* **`-p`**: Preserves modification time, access time, file flags, and permissions. +* **`-R`**: Recursive (copies folders and their contents). + +##### Option B: `rsync` (Best for large transfers) + +Rsync is the professional standard for syncing data while maintaining metadata. + +```bash +rsync -avz --times /Source/Path/ /Destination/Path/ + +``` + +* **`-a` (Archive mode)**: This is a "bundle" flag that preserves permissions, symlinks, and—crucially—timestamps. +* **`--times`**: Explicitly ensures modification times are transferred. ## The shared data table