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<h1>Source code for visualization.hdf5_vis</h1><div class="highlight"><pre>
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<span></span><span class="kn">import</span> <span class="nn">sys</span>
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<span class="kn">import</span> <span class="nn">os</span>
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<span class="n">root_dir</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">curdir</span><span class="p">)</span>
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<span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">root_dir</span><span class="p">)</span>
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<span class="kn">import</span> <span class="nn">h5py</span>
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<span class="kn">import</span> <span class="nn">yaml</span>
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<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
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<span class="kn">import</span> <span class="nn">pandas</span> <span class="k">as</span> <span class="nn">pd</span>
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<span class="kn">from</span> <span class="nn">plotly.subplots</span> <span class="kn">import</span> <span class="n">make_subplots</span>
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<span class="kn">import</span> <span class="nn">plotly.graph_objects</span> <span class="k">as</span> <span class="nn">go</span>
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<span class="kn">import</span> <span class="nn">plotly.express</span> <span class="k">as</span> <span class="nn">px</span>
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<span class="c1">#import plotly.io as pio</span>
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<span class="kn">from</span> <span class="nn">src.hdf5_ops</span> <span class="kn">import</span> <span class="n">get_parent_child_relationships</span>
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<div class="viewcode-block" id="display_group_hierarchy_on_a_treemap">
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<a class="viewcode-back" href="../../modules/vis.html#visualization.hdf5_vis.display_group_hierarchy_on_a_treemap">[docs]</a>
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<span class="k">def</span> <span class="nf">display_group_hierarchy_on_a_treemap</span><span class="p">(</span><span class="n">filename</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
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<span class="w"> </span><span class="sd">"""</span>
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<span class="sd"> filename (str): hdf5 file's filename"""</span>
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<span class="k">with</span> <span class="n">h5py</span><span class="o">.</span><span class="n">File</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span><span class="s1">'r'</span><span class="p">)</span> <span class="k">as</span> <span class="n">file</span><span class="p">:</span>
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<span class="n">nodes</span><span class="p">,</span> <span class="n">parents</span><span class="p">,</span> <span class="n">values</span> <span class="o">=</span> <span class="n">get_parent_child_relationships</span><span class="p">(</span><span class="n">file</span><span class="p">)</span>
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<span class="n">metadata_list</span> <span class="o">=</span> <span class="p">[]</span>
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<span class="n">metadata_dict</span><span class="o">=</span><span class="p">{}</span>
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<span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">file</span><span class="o">.</span><span class="n">attrs</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
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<span class="c1">#if 'metadata' in key:</span>
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<span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">file</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="nb">str</span><span class="p">):</span> <span class="c1"># Check if the attribute is a string</span>
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<span class="n">metadata_key</span> <span class="o">=</span> <span class="n">key</span><span class="p">[</span><span class="n">key</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s1">'_'</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:]</span>
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<span class="n">metadata_value</span> <span class="o">=</span> <span class="n">file</span><span class="o">.</span><span class="n">attrs</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
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<span class="n">metadata_dict</span><span class="p">[</span><span class="n">metadata_key</span><span class="p">]</span> <span class="o">=</span> <span class="n">metadata_value</span>
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<span class="n">metadata_list</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="sa">f</span><span class="s1">'</span><span class="si">{</span><span class="n">metadata_key</span><span class="si">}</span><span class="s1">: </span><span class="si">{</span><span class="n">metadata_value</span><span class="si">}</span><span class="s1">'</span><span class="p">)</span>
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<span class="c1">#metadata_dict[key[key.find('_')+1::]]= file.attrs[key]</span>
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<span class="c1">#metadata_list.append(key[key.find('_')+1::]+':'+file.attrs[key])</span>
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<span class="n">metadata</span> <span class="o">=</span> <span class="s1">'<br>'</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="s1">'<br>'</span><span class="p">]</span> <span class="o">+</span> <span class="n">metadata_list</span><span class="p">)</span>
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<span class="n">customdata_series</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">Series</span><span class="p">(</span><span class="n">nodes</span><span class="p">)</span>
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<span class="n">customdata_series</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="n">metadata</span>
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<span class="n">fig</span> <span class="o">=</span> <span class="n">make_subplots</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="n">specs</span><span class="o">=</span><span class="p">[[{</span><span class="s2">"type"</span><span class="p">:</span> <span class="s2">"domain"</span><span class="p">}]],)</span>
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<span class="n">fig</span><span class="o">.</span><span class="n">add_trace</span><span class="p">(</span><span class="n">go</span><span class="o">.</span><span class="n">Treemap</span><span class="p">(</span>
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<span class="n">labels</span><span class="o">=</span><span class="n">nodes</span><span class="p">,</span> <span class="c1">#formating_df['formated_names'][nodes],</span>
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<span class="n">parents</span><span class="o">=</span><span class="n">parents</span><span class="p">,</span><span class="c1">#formating_df['formated_names'][parents],</span>
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<span class="n">values</span><span class="o">=</span><span class="n">values</span><span class="p">,</span>
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<span class="n">branchvalues</span><span class="o">=</span><span class="s1">'remainder'</span><span class="p">,</span>
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<span class="n">customdata</span><span class="o">=</span> <span class="n">customdata_series</span><span class="p">,</span>
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<span class="c1">#marker=dict(</span>
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<span class="c1"># colors=df_all_trees['color'],</span>
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<span class="c1"># colorscale='RdBu',</span>
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<span class="c1"># cmid=average_score),</span>
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<span class="c1">#hovertemplate='<b>%{label} </b> <br> Number of files: %{value}<br> Success rate: %{color:.2f}',</span>
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<span class="n">hovertemplate</span><span class="o">=</span><span class="s1">'<b>%</span><span class="si">{label}</span><span class="s1"> </b> <br> Count: %</span><span class="si">{value}</span><span class="s1"> <br> Path: %</span><span class="si">{customdata}</span><span class="s1">'</span><span class="p">,</span>
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<span class="n">name</span><span class="o">=</span><span class="s1">''</span><span class="p">,</span>
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<span class="n">root_color</span><span class="o">=</span><span class="s2">"lightgrey"</span>
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<span class="p">))</span>
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<span class="n">fig</span><span class="o">.</span><span class="n">update_layout</span><span class="p">(</span><span class="n">width</span> <span class="o">=</span> <span class="mi">800</span><span class="p">,</span> <span class="n">height</span><span class="o">=</span> <span class="mi">600</span><span class="p">,</span> <span class="n">margin</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">(</span><span class="n">t</span><span class="o">=</span><span class="mi">50</span><span class="p">,</span> <span class="n">l</span><span class="o">=</span><span class="mi">25</span><span class="p">,</span> <span class="n">r</span><span class="o">=</span><span class="mi">25</span><span class="p">,</span> <span class="n">b</span><span class="o">=</span><span class="mi">25</span><span class="p">))</span>
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<span class="n">fig</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
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<span class="n">file_name</span><span class="p">,</span> <span class="n">file_ext</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">splitext</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span>
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<span class="n">fig</span><span class="o">.</span><span class="n">write_html</span><span class="p">(</span><span class="n">file_name</span> <span class="o">+</span> <span class="s2">".html"</span><span class="p">)</span></div>
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<span class="c1">#pio.write_image(fig,file_name + ".png",width=800,height=600,format='png')</span>
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<span class="c1">#</span>
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</pre></div>
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