{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Import libraries and modules\n",
    "\n",
    "* Excecute (or Run) Cell"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "import sys\n",
    "import os\n",
    "root_dir = os.path.abspath(os.curdir)\n",
    "sys.path.append(root_dir)\n",
    "\n",
    "import src.metadata_review_lib as metadata_review_lib"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Step 1: initialize metadata review.\n",
    "\n",
    "* Specify hdf5 file whose metadata is to be reviewed by editing the string variable `hdf5_file_path`.\n",
    "* Edit reviewer attributes, i.e., the dict variable `reviewer_attrs` with your own initials and role.\n",
    "* Excecute Cell."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "\n",
    "#hdf5_file_path = \"output_files/unified_file_smog_chamber_2024-03-25_UTC-OFST_+0100_NG.h5\"\n",
    "#yml_file_path = \"output_files/unified_file_smog_chamber_2024-03-25_UTC-OFST_+0100_NG.yaml\"\n",
    "\n",
    "hdf5_file_path = \"output_files/kinetic_flowtube_study_2022-01-31_LuciaI.h5\"\n",
    "yml_file_path = \"output_files/kinetic_flowtube_study_2022-01-31_LuciaI.yaml\"\n",
    "\n",
    "reviewer_attrs = {'initials': 'LuciaI',\n",
    "                  'type': 'metadata'}\n",
    "\n",
    "#output_filename_path, output_yml_filename_path = hdf5_lib.main()\n",
    "\n",
    "\n",
    "review_yaml_file_path, review_status_yaml_file_path = metadata_review_lib.first_initialize_metadata_review(hdf5_file_path, reviewer_attrs, restart=True)   \n",
    "\n",
    "print(review_yaml_file_path, review_status_yaml_file_path) "
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Step 2: Submit metadata review. \n",
    "\n",
    "* Edit yaml file in review folder and save changes\n",
    "* Excecute Cell."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "metadata_review_lib.second_save_metadata_review(review_yaml_file_path,reviewer_attrs)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Step 3: Update hdf5 file metadata w/ submitted review yaml file.\n",
    "\n",
    "* Make sure previous step was carried out properly.\n",
    "* Excecute Cell."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "\n",
    "metadata_review_lib.third_update_hdf5_file_with_review(hdf5_file_path, review_yaml_file_path, reviewer_attrs)\n"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Step 4: Complete data-owner review. Update remote repository\n",
    "\n",
    "* Excecute Cell."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "metadata_review_lib.last_submit_metadata_review(review_yaml_file_path, review_status_yaml_file_path,reviewer_attrs)"
   ]
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "test_atmos_chem_env",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.11.9"
  }
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