Relocated def display_group_hierarchy_on_a_treemap(filename: str) to hdf5_vis.py

src/hdf5_lib.py

@@ -5,10 +5,7 @@ import os
 #from itertools import product
 import numpy as np
 
-import matplotlib.pyplot as plt
+
-import plotly.express as px
-import plotly.graph_objects as go
-from plotly.subplots import make_subplots
 
 #import g5505_file_reader
 import g5505_utils as utils
@@ -196,43 +193,6 @@ def format_group_names(names: list):
 
 
 
-def display_group_hierarchy_on_a_treemap(filename: str):
-
-    with h5py.File(filename,'r') as file:
-        nodes, parents, values = get_parent_child_relationships(file)
-
-        metadata_list = []
-        metadata_dict={}
-        for key in file.attrs.keys():            
-            if 'metadata' in key:
-                metadata_dict[key[key.find('_')+1::]]= file.attrs[key]
-                metadata_list.append(key[key.find('_')+1::]+':'+file.attrs[key])
-        metadata = '<br>'.join(['<br>'] + metadata_list)
-
-    customdata_series = pd.Series(nodes)
-    customdata_series[0] = metadata
-
-    fig = make_subplots(1, 1, specs=[[{"type": "domain"}]],)
-    fig.add_trace(go.Treemap(
-        labels=nodes, #formating_df['formated_names'][nodes],
-        parents=parents,#formating_df['formated_names'][parents],
-        values=values,
-        branchvalues='remainder',
-        customdata= customdata_series,
-        #marker=dict(
-        #    colors=df_all_trees['color'],
-        #    colorscale='RdBu',
-        #    cmid=average_score),
-        #hovertemplate='<b>%{label} </b> <br> Number of files: %{value}<br> Success rate: %{color:.2f}',
-        hovertemplate='<b>%{label} </b> <br> Count: %{value} <br> Path: %{customdata}',
-        name='',
-        root_color="lightgrey"
-        ))
-    fig.update_layout(width = 800, height= 600, margin = dict(t=50, l=25, r=25, b=25))
-    fig.show()
-    file_name, file_ext = os.path.splitext(filename)
-    fig.write_html(file_name + ".html")
-
 def annotate_root_dir(filename,annotation_dict: dict):
     with h5py.File(filename,'r+') as file:
         for key in annotation_dict:
@@ -241,8 +201,9 @@ def annotate_root_dir(filename,annotation_dict: dict):
     
 import shutil
 
-def create_hdf5_file_from_filesystem_path(ofilename : str, input_file_system_path : 
+def create_hdf5_file_from_filesystem_path(ofilename : str, 
-                                          str, select_dir_keywords = [], 
+                                          input_file_system_path : str, 
+                                          select_dir_keywords = [], 
                                           select_file_keywords =[], 
                                           top_sub_dir_mask : bool = True):
 
@@ -282,9 +243,7 @@ def create_hdf5_file_from_filesystem_path(ofilename : str, input_file_system_pat
         select_dir_keywords[i] = keyword.replace('/',os.sep)
 
 
-    with h5py.File(ofilename, 'w') as h5file:
+    with h5py.File(ofilename, 'w') as h5file:        
-
-        
 
         # Visit each subdirectory from top to bottom, root directory defined by input_file_sytem_path to the lower
         # level directories.
@@ -488,7 +447,7 @@ def main():
 
     output_filename_path = os.path.join(config_file.outputfile_dir,config_file.output_filename)   
     create_hdf5_file_from_filesystem_path(output_filename_path,inputfile_dir,select_dir_keywords,select_file_keywords)
-    display_group_hierarchy_on_a_treemap(output_filename_path)
+    #display_group_hierarchy_on_a_treemap(output_filename_path)
 
 def main_mtable_h5_from_dataframe():
 
@@ -530,7 +489,7 @@ def main_mtable_h5_from_dataframe():
                        }
     annotate_root_dir(output_filename_path, annotation_dict)
 
-    display_group_hierarchy_on_a_treemap(output_filename_path)
+    #display_group_hierarchy_on_a_treemap(output_filename_path)
 
     print(':)')