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Implemented some safeguards that enable only commits of untracked metadata review files

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florez_j
2024-04-04 14:20:13 +02:00
parent d6ee987859
commit d68dc98070
1 changed files with 18 additions and 11 deletions
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29
src/metadata_review_lib.py
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@@ -95,23 +95,30 @@ def first_initialize_metadata_review(hdf5_file_path, reviewer_attrs):
if not os.path.exists(review_yaml_file_path):
review_yaml_file_path = utils.make_file_copy(os.path.join(hdf5_file_path_tail,filename+YAML_EXT), 'review')
review_yaml_file_path_tail, ext = os.path.splitext(review_yaml_file_path)
review_yaml_file_path_tail, ext = os.path.splitext(review_yaml_file_path)
with open(os.path.join(review_yaml_file_path_tail+"-review_status"+".txt"),'w') as f:
f.write('under review')
#if not os.path.exists(os.path.join(review_yaml_file_path_tail+"-review_status"+".txt")):
with open(os.path.join(review_yaml_file_path_tail+"-review_status"+".txt"),'w') as f:
f.write('under review')
# Stage review files and commit them to local repository
# Stage untracked review files and commit them to local repository
status = subprocess.run(status_command,capture_output=True,text=True,check=True)
untracked_files_for_review = []
untracked_files = []
for line in status.stdout.splitlines():
if 'review/' in line.decode('utf8'):
untracked_files_for_review.append(line)
#tmp = line.decode("utf-8")
#modified_files.append(tmp.split()[1])
if 'review/' in line and not 'modified' in line: # untracked files
untracked_files.append(line.strip())
result = subprocess.run(add_command(untracked_files_for_review),capture_output=True,check=True)
message = 'Initialized metadata review.'
commit_output = subprocess.run(commit_command(message),capture_output=True,check=True)
if untracked_files:
result = subprocess.run(add_command(untracked_files),capture_output=True,check=True)
message = 'Initialized metadata review.'
commit_output = subprocess.run(commit_command(message),capture_output=True,check=True)
print(commit_output.stdout)
for line in commit_output.stdout.splitlines():
print(line.decode('utf-8'))
else:
print('This action will not have any effect because metadata review process has been already initialized.')