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Add try except block to trigger errors for invalid group names.

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florez_j
2025-02-06 16:07:45 +01:00
parent 2f72177410
commit b374de60f3
1 changed files with 16 additions and 11 deletions
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27
src/hdf5_writer.py
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@ -191,18 +191,23 @@ def create_hdf5_file_from_filesystem_path(path_to_input_directory: str,
offset = 1 offset = 1
tmp_list = group_name.split('/') tmp_list = group_name.split('/')
if len(tmp_list) > offset+1: if len(tmp_list) > offset+1:
group_name = '/'.join([tmp_list[i] for i in range(offset+1)]) group_name = '/'.join([tmp_list[i] for i in range(offset+1)])
# Create group called "group_name". Hierarchy of nested groups can be implicitly defined by the forward slashes try:
if not group_name in h5file.keys(): # Create group called "group_name". Hierarchy of nested groups can be implicitly defined by the forward slashes
h5file.create_group(group_name) if not group_name in h5file.keys():
h5file[group_name].attrs['creation_date'] = utils.created_at().encode('utf-8') h5file.create_group(group_name)
#h5file[group_name].attrs.create(name='filtered_file_list',data=convert_string_to_bytes(filtered_filename_list)) h5file[group_name].attrs['creation_date'] = utils.created_at().encode('utf-8')
#h5file[group_name].attrs.create(name='file_list',data=convert_string_to_bytes(filenames_list)) #h5file[group_name].attrs.create(name='filtered_file_list',data=convert_string_to_bytes(filtered_filename_list))
#else: #h5file[group_name].attrs.create(name='file_list',data=convert_string_to_bytes(filenames_list))
#print(group_name,' was already created.') #else:
instFoldermsgStart = f'Starting data transfer from instFolder: {group_name}' #print(group_name,' was already created.')
print(instFoldermsgStart) instFoldermsgStart = f'Starting data transfer from instFolder: {group_name}'
print(instFoldermsgStart)
except Exception as inst:
stdout = inst
logging.error('Failed to create group %s into HDF5: %s', group_name, inst)
for filenumber, filename in enumerate(filtered_filenames_list): for filenumber, filename in enumerate(filtered_filenames_list):