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Fixed bugs in update_file() method and create_hdf5_file_from_filesystem_path()

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florez_j
2024-10-03 09:32:25 +02:00
parent 098a79531c
commit 89e9dd9ab1
2 changed files with 7 additions and 6 deletions
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8
src/hdf5_lib.py
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@ -138,10 +138,10 @@ def create_hdf5_file_from_filesystem_path(path_to_input_directory: str,
select_dir_keywords[i] = keyword.replace('/',os.sep) select_dir_keywords[i] = keyword.replace('/',os.sep)
if not path_to_filenames_dict: if not path_to_filenames_dict:
# On dry_run=True, returns path to files dictionary of the output directory without making a actual copy of the input directory # On dry_run=True, returns path to files dictionary of the output directory without making a actual copy of the input directory.
path_to_output_directory = os.path.join(path_to_input_directory,'..') # Therefore, there wont be a copying conflict by setting up input and output directories the same
path_to_filenames_dict = utils.copy_directory_with_contraints(path_to_input_directory, path_to_filenames_dict = utils.copy_directory_with_contraints(input_dir_path=path_to_input_directory,
path_to_output_directory, output_dir_path=path_to_input_directory,
dry_run=True) dry_run=True)
# Set input_directory as copied input directory # Set input_directory as copied input directory
root_dir = path_to_input_directory root_dir = path_to_input_directory

5
src/hdf5_ops.py
View File

@ -359,11 +359,12 @@ class HDF5DataOpsManager():
def update_file(self, path_to_append_dir): def update_file(self, path_to_append_dir):
# Split the reference file path and the append directory path into directories and filenames # Split the reference file path and the append directory path into directories and filenames
ref_tail, ref_head = os.path.split(self.file_path) ref_tail, ref_head = os.path.split(self.file_path)
ref_head_filename, head_ext = os.path.splitext(ref_head)
tail, head = os.path.split(path_to_append_dir) tail, head = os.path.split(path_to_append_dir)
head_filename, head_ext = os.path.splitext(head)
# Ensure the append directory is in the same directory as the reference file and has the same name (without extension) # Ensure the append directory is in the same directory as the reference file and has the same name (without extension)
if not (ref_tail == tail and ref_head == head_filename): if not (ref_tail == tail and ref_head_filename == head):
raise ValueError("The append directory must be in the same directory as the reference HDF5 file and have the same name without the extension.") raise ValueError("The append directory must be in the same directory as the reference HDF5 file and have the same name without the extension.")
# Close the file if it's already open # Close the file if it's already open