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florez_j
2023-11-02 16:11:21 +01:00
parent be1bfc8015
commit 8730a4d2c8
1 changed files with 8 additions and 4 deletions
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12
demo_create_and_visualize_hdf5_file.ipynb
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@ -12,7 +12,9 @@
"# define input file directory\n", "# define input file directory\n",
"\n", "\n",
"input_file_path = './input_files\\\\BeamTimeMetaData.h5'\n", "input_file_path = './input_files\\\\BeamTimeMetaData.h5'\n",
"output_dir_path = './output_files'" "output_dir_path = './output_files'\n",
"if not os.path.exists(output_dir_path):\n",
" os.makedirs(output_dir_path)"
] ]
}, },
{ {
@ -74,7 +76,9 @@
"\n", "\n",
"output_filename = 'test.h5'\n", "output_filename = 'test.h5'\n",
"\n", "\n",
"h5lib.create_hdf5_file(os.path.join(output_dir_path,output_filename),\n", "ofilepath = os.path.join(output_dir_path,output_filename)\n",
"\n",
"h5lib.create_hdf5_file(ofilepath,\n",
" input_data_df, 'top-down', \n", " input_data_df, 'top-down', \n",
" group_by_funcs = [group_by_sample, group_by_type, group_by_filenumber]\n", " group_by_funcs = [group_by_sample, group_by_type, group_by_filenumber]\n",
" )\n", " )\n",
@ -84,9 +88,9 @@
" 'Startdate': str(input_data_df['lastModifiedDatestr'].min()),\n", " 'Startdate': str(input_data_df['lastModifiedDatestr'].min()),\n",
" 'Enddate': str(input_data_df['lastModifiedDatestr'].max())\n", " 'Enddate': str(input_data_df['lastModifiedDatestr'].max())\n",
" }\n", " }\n",
"h5lib.annotate_root_dir('test.h5',annotation_dict)\n", "h5lib.annotate_root_dir(ofilepath,annotation_dict)\n",
"\n", "\n",
"h5lib.display_group_hierarchy_on_a_treemap('test.h5')\n", "h5lib.display_group_hierarchy_on_a_treemap(ofilepath)\n",
"\n", "\n",
"print(':)')\n" "print(':)')\n"
] ]