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Renamed the input argument yaml_review_file as review_yaml_file.

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This commit is contained in:
florez_j
2024-11-01 09:51:12 +01:00
parent e2fec03d4a
commit 510683a50d
1 changed files with 7 additions and 7 deletions
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14
pipelines/metadata_revision.py
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@ -9,8 +9,8 @@ import yaml
import src.hdf5_ops as hdf5_ops import src.hdf5_ops as hdf5_ops
def load_yaml(yaml_review_file): def load_yaml(review_yaml_file):
with open(yaml_review_file, 'r') as stream: with open(review_yaml_file, 'r') as stream:
try: try:
return yaml.load(stream, Loader=yaml.FullLoader) return yaml.load(stream, Loader=yaml.FullLoader)
except yaml.YAMLError as exc: except yaml.YAMLError as exc:
@ -78,7 +78,7 @@ def validate_yaml_dict(input_hdf5_file, yaml_dict):
return len(errors) == 0, errors, notes return len(errors) == 0, errors, notes
def update_hdf5_file_with_review(input_hdf5_file, yaml_review_file): def update_hdf5_file_with_review(input_hdf5_file, review_yaml_file):
""" """
Updates, appends, or deletes metadata attributes in an HDF5 file based on a provided YAML dictionary. Updates, appends, or deletes metadata attributes in an HDF5 file based on a provided YAML dictionary.
@ -97,11 +97,11 @@ def update_hdf5_file_with_review(input_hdf5_file, yaml_review_file):
} }
} }
""" """
yaml_dict = load_yaml(yaml_review_file) yaml_dict = load_yaml(review_yaml_file)
success, errors, notes = validate_yaml_dict(input_hdf5_file,yaml_dict) success, errors, notes = validate_yaml_dict(input_hdf5_file,yaml_dict)
if not success: if not success:
raise ValueError(f"Review yaml file {yaml_review_file} is invalid. Validation errors: {errors}") raise ValueError(f"Review yaml file {review_yaml_file} is invalid. Validation errors: {errors}")
# Initialize HDF5 operations manager # Initialize HDF5 operations manager
DataOpsAPI = hdf5_ops.HDF5DataOpsManager(input_hdf5_file) DataOpsAPI = hdf5_ops.HDF5DataOpsManager(input_hdf5_file)
@ -165,6 +165,6 @@ if __name__ == "__main__":
if sys.argv[1] == 'update': if sys.argv[1] == 'update':
input_hdf5_file = sys.argv[2] input_hdf5_file = sys.argv[2]
yaml_review_file = sys.argv[3] review_yaml_file = sys.argv[3]
update_hdf5_file_with_review(input_hdf5_file, yaml_review_file) update_hdf5_file_with_review(input_hdf5_file, review_yaml_file)
#run(sys.argv[2]) #run(sys.argv[2])