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Made two helper functions private by adding the prefix __

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florez_j
2024-10-01 09:31:41 +02:00
parent 8cd4b7d925
commit 4d48e84e50
1 changed files with 5 additions and 5 deletions
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10
src/hdf5_lib.py
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@ -13,7 +13,7 @@ import instruments.readers.filereader_registry as filereader_registry
def transfer_file_dict_to_hdf5(h5file, group_name, file_dict): def __transfer_file_dict_to_hdf5(h5file, group_name, file_dict):
""" """
Transfers data from a file_dict to an HDF5 file. Transfers data from a file_dict to an HDF5 file.
@ -68,7 +68,7 @@ def transfer_file_dict_to_hdf5(h5file, group_name, file_dict):
print(inst) print(inst)
logging.error('Failed to transfer data into HDF5: %s', inst) logging.error('Failed to transfer data into HDF5: %s', inst)
def copy_file_in_group(source_file_path, dest_file_obj : h5py.File, dest_group_name, work_with_copy : bool = True): def __copy_file_in_group(source_file_path, dest_file_obj : h5py.File, dest_group_name, work_with_copy : bool = True):
# Create copy of original file to avoid possible file corruption and work with it. # Create copy of original file to avoid possible file corruption and work with it.
if work_with_copy: if work_with_copy:
@ -191,7 +191,7 @@ def create_hdf5_file_from_filesystem_path(path_to_input_directory: str,
#file_dict = ext_to_reader_dict[file_ext](os.path.join(dirpath,filename)) #file_dict = ext_to_reader_dict[file_ext](os.path.join(dirpath,filename))
file_dict = filereader_registry.select_file_reader(dest_group_name)(os.path.join(dirpath,filename)) file_dict = filereader_registry.select_file_reader(dest_group_name)(os.path.join(dirpath,filename))
transfer_file_dict_to_hdf5(h5file, group_name, file_dict) __transfer_file_dict_to_hdf5(h5file, group_name, file_dict)
else: else:
source_file_path = os.path.join(dirpath,filename) source_file_path = os.path.join(dirpath,filename)
@ -199,7 +199,7 @@ def create_hdf5_file_from_filesystem_path(path_to_input_directory: str,
#group_name +'/'+filename #group_name +'/'+filename
#ext_to_reader_dict[file_ext](source_file_path, dest_file_obj, dest_group_name) #ext_to_reader_dict[file_ext](source_file_path, dest_file_obj, dest_group_name)
#g5505f_reader.select_file_reader(dest_group_name)(source_file_path, dest_file_obj, dest_group_name) #g5505f_reader.select_file_reader(dest_group_name)(source_file_path, dest_file_obj, dest_group_name)
copy_file_in_group(source_file_path, dest_file_obj, dest_group_name, False) __copy_file_in_group(source_file_path, dest_file_obj, dest_group_name, False)
# Update the progress bar and log the end message # Update the progress bar and log the end message
utils.progressBar(dir_number, number_of_dirs, end_message) utils.progressBar(dir_number, number_of_dirs, end_message)
@ -286,6 +286,6 @@ def save_processed_dataframe_to_hdf5(df, annotator, output_filename): # src_hdf5
with h5py.File(output_filename, mode) as h5file: with h5py.File(output_filename, mode) as h5file:
# Add project level attributes at the root/top level # Add project level attributes at the root/top level
h5file.attrs.update(project_level_attributes) h5file.attrs.update(project_level_attributes)
transfer_file_dict_to_hdf5(h5file, '/', file_dict) __transfer_file_dict_to_hdf5(h5file, '/', file_dict)
#if __name__ == '__main__': #if __name__ == '__main__':