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# DIMA: Data Integration and Metadata Annotation # DIMA: Data Integration and Metadata Annotation
DIMA (Data Integration and Metadata Annotation) is a Python package, developed for the Lab of Atmospheric Chemistry that supports integration of multi-instrument data in HDF5 format, collected across a wide range of experimental campaigns, from beamtimes and kinetic flowtube studies to smog chamber studies and field campaigns. DIMA (Data Integration and Metadata Annotation) is a Python package designed for **the Laboratory of Atmospheric Chemistry** to support the integration of multi-instrument data in HDF5 format. It is tailored for data from diverse experimental campaigns, including beamtimes, kinetic flowtube studies, smog chamber experiments, and field campaigns.
creation of semiformat descriptions using ## Key Features
. This repository is a Python package, consisting of modules data integration, metadata annotation, data manipulation, and visualization of experimental campaign data in HDF5 files.
DIMA provides reusable operations for data integration, manipulation, and extraction using HDF5 files. These serve as the foundation for the following higher-level operations:
1. **Data Integration Pipeline:** Harmonizes and integrates multi-instrument data sources by converting a human-readable campaign descriptor YAML file into a unified HDF5 format.
provides tools and workflows for efficient data integration and metadata management, particularly for experimental campaign data stored in the HDF5 file format. 2. **Metadata Revision Workflow:** Updates and refines metadata through a human-in-the-loop process, optimizing HDF5 file metadata serialization in YAML format to align with conventions and develop campaign-centric vocabularies.
Repository for integrating data in HDF5 from various sources and managing metadata updates in the integrated files. 3. **Visualization pipeline:**
Generates a treemap visualization of an HDF5 file, highlighting its structure and key metadata elements.
Includes tools and workflows for comprehensive data integration and automated metadata review processes. 4. **Jupyter notebooks**
Demonstrates DIMAs core functionalities, such as data integration, HDF5 file creation, visualization, and metadata annotation. Key notebooks include examples for data sharing, OpenBis ETL, and workflow demos.
## Adaptability to Experimental Campaign Needs
## Overview The `instruments/` module is designed to be highly adaptable, accommodating new instrument types or file reading capabilities with minimal code refactoring. The module is complemented by instrument-specific dictionaries of terms in YAML format, which facilitate automated annotation of observed variables with:
DIMA is a collection of reusable data operation modules and high-level workflows designed to streamline the following tasks: - `standard_name`
- `units`
- `description`
- **Data Integration Pipeline**: Harmonizes and integrates diverse data sources into a unified HDF5 format. as suggested by [CF metadata conventions](http://cfconventions.org/).
- **Metadata Revision Workflow**: Updates and refines metadata to ensure consistency and accuracy for experimental campaigns. ### Versioning and Community Collaboration
The instrument-specific dictionaries in YAML format provide a human readable interface for community-based development of instrument vocabularies. These descriptions can potentially be enhanced with semantic annotations for interoperability across research domains.
## Repository Structure ## Repository Structure