Save commit

demo_single_sample_update_to_openbis.py

@@ -1,5 +1,8 @@
+import os, sys
+sys.path.append(os.path.abspath('src'))
+
 import src.openbis_lib as openbis_lib
-import hdf5_lib
+import src.hdf5_lib as hdf5_lib
 import datetime
 import os
 import logging
@@ -20,7 +23,7 @@ def main():
         print(sample.identifier)
     df_openbis = samples.df.copy(deep=True)
     h5_file_path = os.path.join(os.path.curdir,'input_files\\BeamTimeMetaData.h5')
-    df_h5 = hdf5_lib.read_hdf5_as_dataframe(h5_file_path)
+    df_h5 = hdf5_lib.read_mtable_as_dataframe(h5_file_path)
 
     # dataframe preprocessing steps
     df_h5, df_openbis = openbis_lib.align_datetime_observation_windows(df_h5, df_openbis)