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Removed file, which is now in src folder

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florez_j
2024-02-15 16:02:27 +01:00
parent a6400b9ac4
commit 1604e8c7ad
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g5505_file_reader.py
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import numpy as np
import pandas as np
import matplotlib.pyplot as plt
import plotly.express as px
import plotly.graph_objects as go
from plotly.subplots import make_subplots
from igor2.binarywave import load as loadibw
#import h5py
import os
import tempfile
import shutil
def read_xps_ibw_file_as_dict(filename):
""" Reads ibw files from multiphase chemistry group, which contain xps spectra and acquisition settings."""
file_obj = loadibw(filename)
required_keys = ['wData','data_units','dimension_units','note']
if sum([item in required_keys for item in file_obj['wave'].keys()]) < len(required_keys):
raise ValueError('This is not a valid xps ibw file. It does not satisfy minimum adimissibility criteria.')
file_dict = {}
path_tail, path_head = os.path.split(filename)
file_dict['name'] = path_head
file_dict['data'] = file_obj['wave']['wData']
file_dict['data_units'] = file_obj['wave']['data_units']
file_dict['shape'] = file_dict['data'].shape
file_dict['dtype'] = type(file_dict['data'])
file_dict['attributes_dict'] = {}
# Convert notes of bytes class to string class and split string into a list of elements separated by '\r'.
notes_list = file_obj['wave']['note'].decode("utf-8").split('\r')
exclude_list = ['Excitation Energy']
for item in notes_list:
if '=' in item:
key, value = tuple(item.split('='))
# TODO: check if value can be converted into a numeric type. Now all values are string type
if not key in exclude_list:
file_dict['attributes_dict'][key] = value
# TODO: talk to Thorsten to see if there is an easier way to access the below attributes
dimension_labels = file_obj['wave']['dimension_units'].decode("utf-8").split(']')
file_dict['attributes_dict']['dimension_units'] = [item+']' for item in dimension_labels[0:len(dimension_labels)-1]]
return file_dict
def main():
inputfile_dir = '\\\\fs101\\5505\\People\\Juan\\TypicalBeamTime'
file_dict = read_xps_ibw_file_as_dict(inputfile_dir+'\\SES\\0069069_N1s_495eV.ibw')
for key in file_dict.keys():
print(key,file_dict[key])
if __name__ == '__main__':
main()
print(':)')