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Updated bash script and yml env file to set up python interpreter.

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This commit is contained in:
florez_j
2024-12-04 13:52:35 +01:00
parent d422067223
commit 112b88e31f
2 changed files with 5 additions and 4 deletions
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5
environment.yml
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@ -1,5 +1,5 @@
name: PythonEnv5505v2 name: pyenv5505
prefix: ./envs/PythonEnv5505v2 # Custom output folder prefix: ./envs/pyenv5505 # Custom output folder
channels: channels:
- conda-forge - conda-forge
- defaults - defaults
@ -11,6 +11,7 @@ dependencies:
- matplotlib - matplotlib
- plotly=5.24 - plotly=5.24
- scipy - scipy
- sphinx
- pip - pip
- pip: - pip:
- h5py==3.10 - h5py==3.10

4
setup_env.sh
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@ -1,7 +1,7 @@
#!/bin/bash #!/bin/bash
# Define the name and location of the environment # Define the name and location of the environment
ENV_NAME="PythonEnv5505" ENV_NAME="pyenv5505"
ENV_PATH="./envs/$ENV_NAME" # Define a custom output folder ENV_PATH="./envs/$ENV_NAME" # Define a custom output folder
# Check if mamba is available and use it instead of conda for faster installation # Check if mamba is available and use it instead of conda for faster installation
@ -19,7 +19,7 @@ $CONDA_COMMAND create -y -p "$ENV_PATH" python=3.11 \
source activate "$ENV_PATH" || conda activate "$ENV_PATH" source activate "$ENV_PATH" || conda activate "$ENV_PATH"
# Install pip packages in one go to avoid repeated initializations # Install pip packages in one go to avoid repeated initializations
pip install h5py==3.10 pybis==1.35 igor2 ipykernel pip install h5py==3.10 pybis==1.35 igor2 ipykernel sphinx
# Export the environment to a YAML file # Export the environment to a YAML file
$CONDA_COMMAND env export --prefix "$ENV_PATH" > "$ENV_PATH/environment.yaml" $CONDA_COMMAND env export --prefix "$ENV_PATH" > "$ENV_PATH/environment.yaml"