diff --git a/workflow_data_owner_review.ipynb b/workflow_data_owner_review.ipynb index 0047702..beb998e 100644 --- a/workflow_data_owner_review.ipynb +++ b/workflow_data_owner_review.ipynb @@ -40,11 +40,15 @@ "metadata": {}, "outputs": [ { - "name": "stdout", - "output_type": "stream", - "text": [ - "Create branch metadata-review-by-NG\n", - "\n" + "ename": "ValueError", + "evalue": "metadata review cannot be initialized. The associated .yaml file under review was not found. Run take_yml_snapshot_of_hdf5_file(filename_path) ", + "output_type": "error", + "traceback": [ + "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m", + "\u001b[1;31mValueError\u001b[0m Traceback (most recent call last)", + "Cell \u001b[1;32mIn[3], line 12\u001b[0m\n\u001b[0;32m 7\u001b[0m reviewer_attrs \u001b[38;5;241m=\u001b[39m {\u001b[38;5;124m'\u001b[39m\u001b[38;5;124minitials\u001b[39m\u001b[38;5;124m'\u001b[39m: \u001b[38;5;124m'\u001b[39m\u001b[38;5;124mNG\u001b[39m\u001b[38;5;124m'\u001b[39m,\n\u001b[0;32m 8\u001b[0m \u001b[38;5;124m'\u001b[39m\u001b[38;5;124mtype\u001b[39m\u001b[38;5;124m'\u001b[39m: \u001b[38;5;124m'\u001b[39m\u001b[38;5;124mdata-owner\u001b[39m\u001b[38;5;124m'\u001b[39m}\n\u001b[0;32m 10\u001b[0m \u001b[38;5;66;03m#output_filename_path, output_yml_filename_path = hdf5_lib.main()\u001b[39;00m\n\u001b[1;32m---> 12\u001b[0m review_yaml_file_path \u001b[38;5;241m=\u001b[39m \u001b[43mmetadata_review_lib\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mfirst_initialize_metadata_review\u001b[49m\u001b[43m(\u001b[49m\u001b[43mhdf5_file_path\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mreviewer_attrs\u001b[49m\u001b[43m)\u001b[49m \n\u001b[0;32m 14\u001b[0m \u001b[38;5;28mprint\u001b[39m(review_yaml_file_path) \n", + "File \u001b[1;32mc:\\Users\\florez_j\\Documents\\GitLab\\functionspython\\src\\metadata_review_lib.py:69\u001b[0m, in \u001b[0;36mfirst_initialize_metadata_review\u001b[1;34m(hdf5_file_path, reviewer_attrs)\u001b[0m\n\u001b[0;32m 67\u001b[0m \u001b[38;5;66;03m# Verify if yaml snapshot of input h5 file exists \u001b[39;00m\n\u001b[0;32m 68\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m \u001b[38;5;129;01mnot\u001b[39;00m os\u001b[38;5;241m.\u001b[39mpath\u001b[38;5;241m.\u001b[39mexists(os\u001b[38;5;241m.\u001b[39mpath\u001b[38;5;241m.\u001b[39mjoin(hdf5_file_path_tail,filename\u001b[38;5;241m+\u001b[39mYAML_EXT)):\n\u001b[1;32m---> 69\u001b[0m \u001b[38;5;28;01mraise\u001b[39;00m \u001b[38;5;167;01mValueError\u001b[39;00m(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mmetadata review cannot be initialized. The associated .yaml file under review was not found. Run take_yml_snapshot_of_hdf5_file(filename_path) \u001b[39m\u001b[38;5;124m\"\u001b[39m)\n\u001b[0;32m 71\u001b[0m \u001b[38;5;66;03m# Initialize metadata review workflow\u001b[39;00m\n\u001b[0;32m 72\u001b[0m \u001b[38;5;28mprint\u001b[39m(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mCreate branch metadata-review-by-\u001b[39m\u001b[38;5;124m\"\u001b[39m\u001b[38;5;241m+\u001b[39minitials\u001b[38;5;241m+\u001b[39m\u001b[38;5;124m\"\u001b[39m\u001b[38;5;130;01m\\n\u001b[39;00m\u001b[38;5;124m\"\u001b[39m)\n", + "\u001b[1;31mValueError\u001b[0m: metadata review cannot be initialized. The associated .yaml file under review was not found. Run take_yml_snapshot_of_hdf5_file(filename_path) " ] } ], @@ -53,8 +57,8 @@ "#hdf5_file_path = \"output_files/unified_file_smog_chamber_2024-03-25_UTC-OFST_+0100_NG.h5\"\n", "#yml_file_path = \"output_files/unified_file_smog_chamber_2024-03-25_UTC-OFST_+0100_NG.yaml\"\n", "\n", - "hdf5_file_path = \"output_files/unified_file_smog_chamber_2024-03-25_UTC-OFST_+0100_NG.h5\"\n", - "yml_file_path = \"output_files/unified_file_smog_chamber_2024-03-25_UTC-OFST_+0100_NG.yaml\"\n", + "hdf5_file_path = \"output_files/unified_file_smog_chamber_2024-04-03_UTC-OFST_+0200_NG.h5\"\n", + "yml_file_path = \"output_files/unified_file_smog_chamber_2024-04-03_UTC-OFST_+0200_NG.yaml\"\n", "\n", "reviewer_attrs = {'initials': 'NG',\n", " 'type': 'data-owner'}\n",