Index

A

append_dataset() (src.hdf5_ops.HDF5DataOpsManager method) append_metadata() (src.hdf5_ops.HDF5DataOpsManager method)

augment_with_filenumber() (in module utils.g5505_utils) augment_with_filetype() (in module utils.g5505_utils)

C

convert_attrdict_to_np_structured_array() (in module utils.g5505_utils) convert_dataframe_to_np_structured_array() (in module utils.g5505_utils) convert_string_to_bytes() (in module utils.g5505_utils) copy_directory_with_contraints() (in module utils.g5505_utils)

copy_subtree_and_create_hdf5() (in module pipelines.data_integration) count() (in module pipelines.metadata_revision) create_hdf5_file_from_dataframe() (in module src.hdf5_writer) create_hdf5_file_from_filesystem_path() (in module src.hdf5_writer) created_at() (in module utils.g5505_utils)

D

delete_metadata() (src.hdf5_ops.HDF5DataOpsManager method)

display_group_hierarchy_on_a_treemap() (in module visualization.hdf5_vis)

E

extract_and_load_dataset_metadata() (src.hdf5_ops.HDF5DataOpsManager method)

extract_dataset_as_dataframe() (src.hdf5_ops.HDF5DataOpsManager method)

G

get_groups_at_a_level() (in module src.hdf5_ops) get_metadata() (src.hdf5_ops.HDF5DataOpsManager method)

get_parent_child_relationships() (in module src.hdf5_ops) group_by_df_column() (in module utils.g5505_utils)

H

HDF5DataOpsManager (class in src.hdf5_ops)

I

infer_units() (in module utils.g5505_utils) is_callable_list() (in module utils.g5505_utils)

is_str_list() (in module utils.g5505_utils) is_structured_array() (in module utils.g5505_utils)

L

load_config_and_setup_logging() (in module pipelines.data_integration)

load_file_obj() (src.hdf5_ops.HDF5DataOpsManager method) load_yaml() (in module pipelines.metadata_revision)

M

make_file_copy() (in module utils.g5505_utils) module notebooks pipelines.data_integration pipelines.metadata_revision src.hdf5_ops src.hdf5_writer utils.g5505_utils visualization.hdf5_vis

N

notebooks module

P

pipelines.data_integration module

pipelines.metadata_revision module progressBar() (in module utils.g5505_utils)

R

read_mtable_as_dataframe() (in module src.hdf5_ops) reformat_datetime_column() (src.hdf5_ops.HDF5DataOpsManager method)

rename_metadata() (src.hdf5_ops.HDF5DataOpsManager method) run_pipeline() (in module pipelines.data_integration)

S

sanitize_dataframe() (in module utils.g5505_utils) save_processed_dataframe_to_hdf5() (in module src.hdf5_writer) serialize_metadata() (in module src.hdf5_ops) setup_logging() (in module utils.g5505_utils)

split_sample_col_into_sample_and_data_quality_cols() (in module utils.g5505_utils) src.hdf5_ops module src.hdf5_writer module

T

to_serializable_dtype() (in module utils.g5505_utils)

U

unload_file_obj() (src.hdf5_ops.HDF5DataOpsManager method) update_file() (src.hdf5_ops.HDF5DataOpsManager method) update_hdf5_file_with_review() (in module pipelines.metadata_revision)

update_metadata() (src.hdf5_ops.HDF5DataOpsManager method) utils.g5505_utils module

V

validate_yaml_dict() (in module pipelines.metadata_revision)

visualization.hdf5_vis module