{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Import libraries and modules"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "import sys\n",
    "import os\n",
    "# Set up project root directory\n",
    "root_dir = os.path.abspath(os.curdir)\n",
    "sys.path.append(root_dir)\n",
    "\n",
    "import src.hdf5_vis as hdf5_vis\n",
    "import src.data_integration_lib as dilib\n",
    "import yaml\n"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Specify data integration task through yaml configuration file\n",
    "\n",
    "* Create your configuration file (i.e., *.yaml file) adhering to the example yaml file in the input folder.\n",
    "* Set up the path and Excecute Cell.\n",
    "\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "#output_filename_path = 'output_files/unified_file_smog_chamber_2024-04-07_UTC-OFST_+0200_NG.h5'\n",
    "yaml_config_file_path = 'input_files/data_integr_config_file_LI.yaml'\n",
    "output_filename_path, output_yml_filename_path = dilib.integrate_data_sources(yaml_config_file_path)\n"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Display integrated file using a treemap"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "hdf5_vis.display_group_hierarchy_on_a_treemap(output_filename_path)"
   ]
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "test_atmos_chem_env",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.11.9"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 2
}
